{"id":1718,"date":"2024-11-05T20:43:13","date_gmt":"2024-11-05T20:43:13","guid":{"rendered":"https:\/\/lab.research.sickkids.ca\/sung\/?page_id=1718"},"modified":"2025-01-28T13:58:12","modified_gmt":"2025-01-28T13:58:12","slug":"omop","status":"publish","type":"page","link":"https:\/\/lab.research.sickkids.ca\/sung\/omop\/","title":{"rendered":"OMOP"},"content":{"rendered":"

<\/div>

OMOP<\/h1><\/div>

Enabling Multi-Centre Collaborations<\/p>\n<\/div><\/div><\/div><\/div><\/div>

\"SEDAR<\/span><\/div><\/div><\/div>

The Observational Medical Outcomes Partnership (OMOP)<\/b> Common Data Model (CDM) standardizes the structure and vocabulary of observational data to enable efficient analyses that can produce reliable evidence. OMOP was developed by the Observational Health Data Sciences and Informatics (OHDSI) based at Columbia University and is being used around the world.<\/p>\n

The SickKids version uses SEDAR data and de-identifies it (SK-OMOP DeID). Time stamps are shifted but are consistent within individuals.<\/p>\n<\/div><\/div><\/div><\/div><\/div>

<\/i>0<\/span>M<\/span><\/div>
1.8 million patients<\/div><\/div><\/div>
<\/i>0<\/span>M<\/span><\/div>
2.5 million visits<\/div><\/div><\/div>
<\/i>0<\/span>M<\/span><\/div>
2.9 million diagnoses<\/div><\/div><\/div>
<\/i>0<\/span>M<\/span><\/div>
132 million measurements<\/div><\/div><\/div><\/div><\/div><\/div>
<\/i><\/span><\/div><\/div>
<\/div>
\n

First Canadian hospital to join 13% of global population covered by OMOP<\/p>\n<\/div><\/div><\/div>

<\/i><\/span><\/div><\/div>
<\/div>
\n

Facilitates multi-center research<\/p>\n<\/div><\/div><\/div>

<\/i><\/span><\/div><\/div>
<\/div>
\n

Deidentified<\/p>\n<\/div><\/div><\/div>

<\/div><\/div><\/div><\/div><\/div><\/div>

Key publications<\/h2><\/div>

Guo LL, Fries J, Steinberg E, Fleming SL, Morse K, Aftandilian C, Posada J, Shah N, Sung L. A multi-center study on the adaptability of a shared foundation model for electronic health records<\/a>. NPJ Digit Med. 2024 Jun 27;7(1):171. doi: 10.1038\/s41746-024-01166-w. PMID: 38937550; PMCID: PMC11211479.<\/p>\n

Guo LL, Calligan M, Vettese E, Cook S, Gagnidze G, Han O, Inoue J, Lemmon J, Li J, Roshdi M, Sadovy B, Wallace S, Sung L. Development and validation of the SickKids Enterprise-wide Data in Azure Repository (SEDAR).<\/a> Heliyon. 2023 Nov 2;9(11):e21586. doi: 10.1016\/j.heliyon.2023.e21586. PMID: 38027579; PMCID: PMC10661187.<\/p>\n<\/div><\/div><\/div>

<\/b>Resources<\/h2><\/div>

Observational Health Data Sciences and Informatics (OHDSI)<\/a>: The OHDSI is a global collaborative focused on using large-scale health data analytics to improve research and outcomes. It provides open-source tools and fosters an international network of researchers and health databases.<\/p>\n<\/div><\/div><\/div><\/div><\/div>

<\/b><\/p>\n

Contact<\/h2><\/div>

To discuss more about OMOP, please email: sedar.support@sickkids.ca<\/a><\/p>\n<\/div><\/div><\/div><\/div><\/div><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":476,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"100-width.php","meta":{"footnotes":""},"class_list":["post-1718","page","type-page","status-publish","hentry"],"yoast_head":"\nOMOP - Sung Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/lab.research.sickkids.ca\/sung\/omop\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"OMOP\" \/>\n<meta property=\"og:url\" content=\"https:\/\/lab.research.sickkids.ca\/sung\/omop\/\" \/>\n<meta property=\"og:site_name\" content=\"Sung Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2025-01-28T13:58:12+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"21 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/sung\/omop\/\",\"url\":\"https:\/\/lab.research.sickkids.ca\/sung\/omop\/\",\"name\":\"OMOP - 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