{"id":2,"date":"2016-03-30T14:56:22","date_gmt":"2016-03-30T14:56:22","guid":{"rendered":"https:\/\/lab.research.sickkids.ca\/jones\/?page_id=2"},"modified":"2021-09-07T21:22:32","modified_gmt":"2021-09-07T21:22:32","slug":"research","status":"publish","type":"page","link":"https:\/\/lab.research.sickkids.ca\/jones\/research\/","title":{"rendered":"Research"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row][vc_column width=&#8221;1\/2&#8243;][vc_column_text css_animation=&#8221;slideInUp&#8221;]<\/p>\n<h2><em>Helicobacter pylori (H. pylori)<\/em><\/h2>\n<p><em>Helicobacter pylori<\/em> (<em>H. pylori<\/em>) infects 50% of the world\u2019s population and can lead to peptic ulcer disease and gastric cancer. In fact, <em>H. pylori<\/em> is the single most important risk factor for the development of gastric cancer. To cause a chronic infection, <em>H. pylori<\/em> must possess mechanisms that allow it to evade host responses. The Jones laboratory is focused on determining these mechanisms and how they may be related to disease in particular gastric carcinogenesis.<\/p>\n<p>We are currently investigating how the Vacuolating cytotoxin (VacA), a virulence factor secreted by <em>H. pylori<\/em>, alters host cell trafficking to develop an intracellular niche for the bacteria where it can survive in parietal cells and escape from antibiotic eradication therapy. We have determined that VacA inhibits a lysosomal calcium channel TRPML1 to create this niche. Furthermore, activating TRPML1 eliminates the niche and kills the bacteria. We are now interested in targeting this pathway as a potential novel therapeutic. We are also interested in how inhibition of this channel can alter parietal cell function to promote disease such as gastric cancer.[\/vc_column_text][\/vc_column][vc_column width=&#8221;1\/2&#8243;]<style type=\"text\/css\" data-type=\"the7_shortcodes-inline-css\">.shortcode-single-image-wrap.shortcode-single-image-3d68580725bcbbc1ea2e73d7d15c05d8.enable-bg-rollover .rollover i,\n.shortcode-single-image-wrap.shortcode-single-image-3d68580725bcbbc1ea2e73d7d15c05d8.enable-bg-rollover .rollover-video i {\n  background: -webkit-linear-gradient();\n  background: linear-gradient();\n}\n.shortcode-single-image-wrap.shortcode-single-image-3d68580725bcbbc1ea2e73d7d15c05d8 .rollover-icon {\n  font-size: 32px;\n  color: #ffffff;\n  min-width: 44px;\n  min-height: 44px;\n  line-height: 44px;\n  border-radius: 100px;\n  border-style: solid;\n  border-width: 0px;\n}\n.dt-icon-bg-on.shortcode-single-image-wrap.shortcode-single-image-3d68580725bcbbc1ea2e73d7d15c05d8 .rollover-icon {\n  background: rgba(255,255,255,0.3);\n  box-shadow: none;\n}<\/style><div class=\"shortcode-single-image-wrap shortcode-single-image-3d68580725bcbbc1ea2e73d7d15c05d8 alignnone  enable-bg-rollover dt-icon-bg-off\" style=\"margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; width:700px;\"><div class=\"shortcode-single-image\"><div class=\"fancy-media-wrap  layzr-bg\" style=\"\"><img fetchpriority=\"high\" decoding=\"async\" class=\"preload-me lazy-load aspect\" src=\"data:image\/svg+xml,%3Csvg%20xmlns%3D&#39;http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg&#39;%20viewBox%3D&#39;0%200%20700%20330&#39;%2F%3E\" data-src=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/H.-Pylori-Image-700x330.jpg\" data-srcset=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/H.-Pylori-Image-700x330.jpg 700w, https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/H.-Pylori-Image.jpg 1264w\" loading=\"eager\" sizes=\"(max-width: 700px) 100vw, 700px\" width=\"700\" height=\"330\"  data-dt-location=\"https:\/\/lab.research.sickkids.ca\/jones\/research\/h-pylori-image\/\" style=\"--ratio: 700 \/ 330;\" alt=\"An illustration of the mechanism by which the VacA toxin secreted by H. pylori inhibits the lysosomal Ca2+ channel TRPML1 and impairs the vesicular trafficking leading to non-degradative lysosomes. These dysfunctional lysosomes are not capable of killing the intracellular H. pylori.\" \/><\/div><\/div><\/div>[\/vc_column][\/vc_row][vc_row][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;231&#8243; img_size=&#8221;400&#215;384&#8243; alignment=&#8221;center&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;232&#8243; img_size=&#8221;400&#215;400&#8243; alignment=&#8221;center&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;233&#8243; img_size=&#8221;400&#215;400&#8243; alignment=&#8221;center&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;234&#8243; img_size=&#8221;400&#215;400&#8243; alignment=&#8221;center&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][\/vc_row][vc_row][vc_column][vc_column_text]<i>H. pylori <\/i>VacA toxin transforms normal lysosomes (labelled by Lamp1 in green) into huge vacuoles to promote intracellular bacterial survival[\/vc_column_text][\/vc_column][\/vc_row][vc_row][vc_column width=&#8221;1\/4&#8243;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;238&#8243; img_size=&#8221;215px&#8221; onclick=&#8221;zoom&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][vc_single_image image=&#8221;236&#8243; img_size=&#8221;215px&#8221; onclick=&#8221;zoom&#8221; css_animation=&#8221;appear&#8221;][\/vc_column][vc_column width=&#8221;1\/4&#8243;][\/vc_column][\/vc_row][vc_row][vc_column][vc_column_text]<\/p>\n<p style=\"text-align: center;\"><em>H. pylori<\/em> staining (red) in human gastric biopsies<\/p>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row][vc_column width=&#8221;1\/2&#8243;][vc_column_text css_animation=&#8221;slideInUp&#8221;]<\/p>\n<h2>Inflammatory Bowel Disease (IBD)<\/h2>\n<p>Canada has one of the highest rates of inflammatory bowel disease in the world. Our research team is interested in understanding how host genetic risk factors and environmental factors associated with IBD promote disease in the hopes of developing novel solutions to treat or prevent disease.<\/p>\n<p>We are interested in two main genetic risk factors, ATG16L1 and Nod2 and how they influence autophagy, the cells garbage disposal system to cause disease.<\/p>\n<p>We are also interested in vitamin D, as vitamin D deficiency is linked to IBD and more severe disease. We have shown that vitamin D deficiency, an environmental risk factor that is associated with IBD alters microRNA that target autophagy genes, including ATG16L1 in the intestine of mice and in involved tissue from IBD patients. We are interested in the effect of vitamin D deficiency in the context of IBD genetic risk factors.[\/vc_column_text][\/vc_column][vc_column width=&#8221;1\/2&#8243;]<style type=\"text\/css\" data-type=\"the7_shortcodes-inline-css\">.shortcode-single-image-wrap.shortcode-single-image-1f93846682ed5912af9ef9ea04da4623.enable-bg-rollover .rollover i,\n.shortcode-single-image-wrap.shortcode-single-image-1f93846682ed5912af9ef9ea04da4623.enable-bg-rollover .rollover-video i {\n  background: -webkit-linear-gradient();\n  background: linear-gradient();\n}\n.shortcode-single-image-wrap.shortcode-single-image-1f93846682ed5912af9ef9ea04da4623 .rollover-icon {\n  font-size: 32px;\n  color: #ffffff;\n  min-width: 44px;\n  min-height: 44px;\n  line-height: 44px;\n  border-radius: 100px;\n  border-style: solid;\n  border-width: 0px;\n}\n.dt-icon-bg-on.shortcode-single-image-wrap.shortcode-single-image-1f93846682ed5912af9ef9ea04da4623 .rollover-icon {\n  background: rgba(255,255,255,0.3);\n  box-shadow: none;\n}<\/style><div class=\"shortcode-single-image-wrap shortcode-single-image-1f93846682ed5912af9ef9ea04da4623 alignnone  enable-bg-rollover dt-icon-bg-off\" style=\"margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; width:700px;\"><div class=\"shortcode-single-image\"><div class=\"fancy-media-wrap  layzr-bg\" style=\"\"><img decoding=\"async\" class=\"preload-me lazy-load aspect\" src=\"data:image\/svg+xml,%3Csvg%20xmlns%3D&#39;http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg&#39;%20viewBox%3D&#39;0%200%20700%20372&#39;%2F%3E\" data-src=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Image-Final-700x372.jpg\" data-srcset=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Image-Final-700x372.jpg 700w, https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Image-Final.jpg 1083w\" loading=\"eager\" sizes=\"(max-width: 700px) 100vw, 700px\" width=\"700\" height=\"372\"  data-dt-location=\"https:\/\/lab.research.sickkids.ca\/jones\/research\/ibd-image-final\/\" style=\"--ratio: 700 \/ 372;\" alt=\"A Venn-diagram explaining how genetics, environmental factors, microbiome, and immune system intersects in the pathogenesis of IBD. The Jones lab studies on genetic factors like Nod2 frame shift and ATG16L1, and environmental factors like Vitamin D deficiency.\" \/><\/div><\/div><\/div>[\/vc_column][\/vc_row][vc_row][vc_column]<style type=\"text\/css\" data-type=\"the7_shortcodes-inline-css\">.shortcode-single-image-wrap.shortcode-single-image-174f9f13f59f7be1d88087c0befe367e.enable-bg-rollover .rollover i,\n.shortcode-single-image-wrap.shortcode-single-image-174f9f13f59f7be1d88087c0befe367e.enable-bg-rollover .rollover-video i {\n  background: -webkit-linear-gradient();\n  background: linear-gradient();\n}\n.shortcode-single-image-wrap.shortcode-single-image-174f9f13f59f7be1d88087c0befe367e .rollover-icon {\n  font-size: 32px;\n  color: #ffffff;\n  min-width: 44px;\n  min-height: 44px;\n  line-height: 44px;\n  border-radius: 100px;\n  border-style: solid;\n  border-width: 0px;\n}\n.dt-icon-bg-on.shortcode-single-image-wrap.shortcode-single-image-174f9f13f59f7be1d88087c0befe367e .rollover-icon {\n  background: rgba(255,255,255,0.3);\n  box-shadow: none;\n}<\/style><div class=\"shortcode-single-image-wrap shortcode-single-image-174f9f13f59f7be1d88087c0befe367e alignnone fadeInUp animate-element  enable-bg-rollover dt-icon-bg-off\" style=\"margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; width:700px;\"><div class=\"shortcode-single-image\"><div class=\"fancy-media-wrap  layzr-bg\" style=\"\"><img decoding=\"async\" class=\"preload-me lazy-load aspect\" src=\"data:image\/svg+xml,%3Csvg%20xmlns%3D&#39;http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg&#39;%20viewBox%3D&#39;0%200%20700%20423&#39;%2F%3E\" data-src=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Figure-700x423.png\" data-srcset=\"https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Figure-700x423.png 700w, https:\/\/lab.research.sickkids.ca\/jones\/wp-content\/uploads\/sites\/109\/2021\/08\/IBD-Figure.png 720w\" loading=\"eager\" sizes=\"(max-width: 700px) 100vw, 700px\" width=\"700\" height=\"423\"  data-dt-location=\"https:\/\/lab.research.sickkids.ca\/jones\/research\/ibd-figure\/\" style=\"--ratio: 700 \/ 423;\" alt=\"A microscopic image of small intestines obtained from control and vitamin D-deficient mice stained in red for a marker of Paneth cell granules. On the left, in the control small intestine, the red clusters of Paneth cell granules are homogenous in size and number. On the right, red clusters of Paneth cell granules are larger or diffuse in the vitamin D-deficient mouse.\" \/><\/div><\/div><\/div>[\/vc_column][\/vc_row][vc_row][vc_column][vc_column_text]<\/p>\n<p style=\"text-align: center;\">Vitamin D deficient (VDD) mice have abnormal Paneth cell granules (UEA-1 staining)<\/p>\n<p>[\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>[vc_row][vc_column width=&#8221;1\/2&#8243;][vc_column_text css_animation=&#8221;slideInUp&#8221;] Helicobacter pylori (H. pylori) Helicobacter pylori (H. pylori) infects 50% of the world\u2019s population and can lead to peptic ulcer disease and gastric cancer. In fact, H. pylori is the single most important risk factor for the development of gastric cancer. To cause a chronic infection, H. pylori must possess mechanisms that&hellip;<\/p>\n","protected":false},"author":332,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2","page","type-page","status-publish","hentry","description-off"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v27.0 (Yoast SEO v27.0) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>Research - Jones Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/lab.research.sickkids.ca\/jones\/research\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Research\" \/>\n<meta property=\"og:description\" content=\"[vc_row][vc_column width=&#8221;1\/2&#8243;][vc_column_text css_animation=&#8221;slideInUp&#8221;] Helicobacter pylori (H. pylori) Helicobacter pylori (H. pylori) infects 50% of the world\u2019s population and can lead to peptic ulcer disease and gastric cancer. In fact, H. pylori is the single most important risk factor for the development of gastric cancer. To cause a chronic infection, H. pylori must possess mechanisms that&hellip;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/lab.research.sickkids.ca\/jones\/research\/\" \/>\n<meta property=\"og:site_name\" content=\"Jones Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2021-09-07T21:22:32+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"3 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/jones\/research\/\",\"url\":\"https:\/\/lab.research.sickkids.ca\/jones\/research\/\",\"name\":\"Research - Jones Lab\",\"isPartOf\":{\"@id\":\"https:\/\/lab.research.sickkids.ca\/jones\/#website\"},\"datePublished\":\"2016-03-30T14:56:22+00:00\",\"dateModified\":\"2021-09-07T21:22:32+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/lab.research.sickkids.ca\/jones\/research\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/lab.research.sickkids.ca\/jones\/research\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/jones\/research\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/lab.research.sickkids.ca\/jones\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Research\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/jones\/#website\",\"url\":\"https:\/\/lab.research.sickkids.ca\/jones\/\",\"name\":\"Jones Lab\",\"description\":\"\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/lab.research.sickkids.ca\/jones\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO Premium plugin. -->","yoast_head_json":{"title":"Research - Jones Lab","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/lab.research.sickkids.ca\/jones\/research\/","og_locale":"en_US","og_type":"article","og_title":"Research","og_description":"[vc_row][vc_column width=&#8221;1\/2&#8243;][vc_column_text css_animation=&#8221;slideInUp&#8221;] Helicobacter pylori (H. pylori) Helicobacter pylori (H. pylori) infects 50% of the world\u2019s population and can lead to peptic ulcer disease and gastric cancer. 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