{"id":304,"date":"2020-03-06T22:02:29","date_gmt":"2020-03-06T22:02:29","guid":{"rendered":"https:\/\/lab.research.sickkids.ca\/imagingfacility\/?page_id=304"},"modified":"2024-06-06T13:28:16","modified_gmt":"2024-06-06T13:28:16","slug":"software-2-2","status":"publish","type":"page","link":"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/","title":{"rendered":"Software"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row full_width=&#8221;stretch_row&#8221; css=&#8221;.vc_custom_1583787702355{padding-top: 100px !important;padding-bottom: 100px !important;background-color: #eaeaea !important;}&#8221; anchor=&#8221;#dataserver&#8221;][vc_column][vc_row_inner equal_height=&#8221;yes&#8221; css=&#8221;.vc_custom_1456148051953{margin-top: 0px !important;}&#8221;][vc_column_inner css=&#8221;.vc_custom_1456148028687{padding-right: 35px !important;padding-left: 35px !important;background-color: #dd4949 !important;}&#8221;][vc_custom_heading text=&#8221;DATA SERVER&#8221; font_container=&#8221;tag:h2|text_align:left|color:%23ffffff&#8221; use_theme_fonts=&#8221;yes&#8221;][\/vc_column_inner][vc_column_inner][vc_column_text]The Acquifer HIVE is the Imaging Facility&#8217;s primary data server. It is a modular and scalable computing platform designed to store, process and analyze large datasets generated from Facility microscopes. This workflow provides three key advantages:<\/p>\n<ol>\n<li>By recording all microscopy data directly to the HIVE, there is no movement or duplication of data across computers.<\/li>\n<li>Data is accessible from anywhere within the Hospital via remote desktop access.<\/li>\n<li>The ability to leverage the HIVE\u2019s computational resources for large-scale, complex data analysis using a variety of commercial and open-source software<\/li>\n<\/ol>\n<p><strong>Acquifer HIVE Specifications<\/strong><\/p>\n<ul>\n<li>2 x Intel Xeon Platinum (24-core, 2.9 GHz, 35.75 MB cache)<\/li>\n<li>1024 GB ECC RAM<\/li>\n<li>10 TB SSD storage<\/li>\n<li>104 TB storage (RAID6)<\/li>\n<li>2 x Nvidia Quadro RTX6000 (24 GB)<\/li>\n<li>2 x 10Gbit\/s connectivity<\/li>\n<\/ul>\n<p>For access, please <a href=\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/contact\/\">contact the Imaging Facility.<\/a>[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row anchor=&#8221;#software&#8221;][vc_column][vc_row_inner equal_height=&#8221;yes&#8221; css=&#8221;.vc_custom_1456148051953{margin-top: 0px !important;}&#8221;][vc_column_inner css=&#8221;.vc_custom_1456148028687{padding-right: 35px !important;padding-left: 35px !important;background-color: #dd4949 !important;}&#8221;][vc_custom_heading text=&#8221;SOFTWARE&#8221; font_container=&#8221;tag:h2|text_align:left|color:%23ffffff&#8221; use_theme_fonts=&#8221;yes&#8221;][\/vc_column_inner][vc_column_inner][vc_column_text]The Imaging Facility provides a variety of commercial and open-source software for image analysis. Typical analysis techniques include 3D rendering, fluorescence intensity measurements, colocalization analysis, object segmentation and distribution analysis, particle tracking, image deconvolution, etc.[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][vc_row_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;388&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;393&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;390&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;392&#8243; img_size=&#8221;full&#8221; alignment=&#8221;center&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;391&#8243; img_size=&#8221;full&#8221; alignment=&#8221;center&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;457&#8243;][\/vc_column_inner][\/vc_row_inner][vc_row_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;389&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;394&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;387&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;384&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;385&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][vc_column_inner width=&#8221;1\/6&#8243;][vc_single_image image=&#8221;386&#8243; img_size=&#8221;full&#8221;][\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row][vc_column][vc_column_text]<strong>All Imaging Facility equipment can be booked through\u00a0<a href=\"https:\/\/my.qreserve.com\/site\/Y0_vzAyNEIg0VvHbjraXvEixxYg=\" target=\"_blank\" rel=\"noopener noreferrer\">QReserve<\/a>.<\/strong>[\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>[vc_row full_width=&#8221;stretch_row&#8221; css=&#8221;.vc_custom_1583787702355{padding-top: 100px !important;padding-bottom: 100px !important;background-color: #eaeaea !important;}&#8221; anchor=&#8221;#dataserver&#8221;][vc_column][vc_row_inner equal_height=&#8221;yes&#8221; css=&#8221;.vc_custom_1456148051953{margin-top: 0px !important;}&#8221;][vc_column_inner css=&#8221;.vc_custom_1456148028687{padding-right: 35px !important;padding-left: 35px !important;background-color: #dd4949 !important;}&#8221;][vc_custom_heading text=&#8221;DATA SERVER&#8221; font_container=&#8221;tag:h2|text_align:left|color:%23ffffff&#8221; use_theme_fonts=&#8221;yes&#8221;][\/vc_column_inner][vc_column_inner][vc_column_text]The Acquifer HIVE is the Imaging Facility&#8217;s primary data server. It is a modular and scalable computing platform designed to store, process and analyze large datasets generated from Facility microscopes. This&hellip;<\/p>\n","protected":false},"author":267,"featured_media":0,"parent":27,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-304","page","type-page","status-publish","hentry","description-off"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v27.0 (Yoast SEO v27.0) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>Software - SickKids Imaging Facility<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Software\" \/>\n<meta property=\"og:description\" content=\"[vc_row full_width=&#8221;stretch_row&#8221; css=&#8221;.vc_custom_1583787702355{padding-top: 100px !important;padding-bottom: 100px !important;background-color: #eaeaea !important;}&#8221; anchor=&#8221;#dataserver&#8221;][vc_column][vc_row_inner equal_height=&#8221;yes&#8221; css=&#8221;.vc_custom_1456148051953{margin-top: 0px !important;}&#8221;][vc_column_inner css=&#8221;.vc_custom_1456148028687{padding-right: 35px !important;padding-left: 35px !important;background-color: #dd4949 !important;}&#8221;][vc_custom_heading text=&#8221;DATA SERVER&#8221; font_container=&#8221;tag:h2|text_align:left|color:%23ffffff&#8221; use_theme_fonts=&#8221;yes&#8221;][\/vc_column_inner][vc_column_inner][vc_column_text]The Acquifer HIVE is the Imaging Facility&#8217;s primary data server. It is a modular and scalable computing platform designed to store, process and analyze large datasets generated from Facility microscopes. This&hellip;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/\" \/>\n<meta property=\"og:site_name\" content=\"SickKids Imaging Facility\" \/>\n<meta property=\"article:modified_time\" content=\"2024-06-06T13:28:16+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"3 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/\",\"url\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/\",\"name\":\"Software - SickKids Imaging Facility\",\"isPartOf\":{\"@id\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/#website\"},\"datePublished\":\"2020-03-06T22:02:29+00:00\",\"dateModified\":\"2024-06-06T13:28:16+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Equipment\",\"item\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Software\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/#website\",\"url\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/\",\"name\":\"SickKids Imaging Facility\",\"description\":\"\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/lab.research.sickkids.ca\/imagingfacility\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO Premium plugin. -->","yoast_head_json":{"title":"Software - SickKids Imaging Facility","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/lab.research.sickkids.ca\/imagingfacility\/equipment\/software-2-2\/","og_locale":"en_US","og_type":"article","og_title":"Software","og_description":"[vc_row full_width=&#8221;stretch_row&#8221; css=&#8221;.vc_custom_1583787702355{padding-top: 100px !important;padding-bottom: 100px !important;background-color: #eaeaea !important;}&#8221; anchor=&#8221;#dataserver&#8221;][vc_column][vc_row_inner equal_height=&#8221;yes&#8221; css=&#8221;.vc_custom_1456148051953{margin-top: 0px !important;}&#8221;][vc_column_inner css=&#8221;.vc_custom_1456148028687{padding-right: 35px !important;padding-left: 35px !important;background-color: #dd4949 !important;}&#8221;][vc_custom_heading text=&#8221;DATA SERVER&#8221; font_container=&#8221;tag:h2|text_align:left|color:%23ffffff&#8221; use_theme_fonts=&#8221;yes&#8221;][\/vc_column_inner][vc_column_inner][vc_column_text]The Acquifer HIVE is the Imaging Facility&#8217;s primary data server. 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