{"id":602,"date":"2019-11-12T16:23:35","date_gmt":"2019-11-12T16:23:35","guid":{"rendered":"https:\/\/lab.research.sickkids.ca\/casca\/?page_id=602"},"modified":"2025-01-09T19:17:14","modified_gmt":"2025-01-09T19:17:14","slug":"hyperion-imaging-mass-cytometry","status":"publish","type":"page","link":"https:\/\/lab.research.sickkids.ca\/casca\/hyperion-imaging-mass-cytometry\/","title":{"rendered":"Hyperion Imaging Mass Cytometry"},"content":{"rendered":"<div class=\"fusion-fullwidth fullwidth-box fusion-builder-row-1 fusion-flex-container has-pattern-background has-mask-background nonhundred-percent-fullwidth non-hundred-percent-height-scrolling\" style=\"--awb-border-radius-top-left:0px;--awb-border-radius-top-right:0px;--awb-border-radius-bottom-right:0px;--awb-border-radius-bottom-left:0px;--awb-flex-wrap:wrap;\" ><div class=\"fusion-builder-row fusion-row fusion-flex-align-items-flex-start fusion-flex-content-wrap\" style=\"max-width:1331.2px;margin-left: calc(-4% \/ 2 );margin-right: calc(-4% \/ 2 );\"><div class=\"fusion-layout-column fusion_builder_column fusion-builder-column-0 fusion_builder_column_2_3 2_3 fusion-flex-column\" style=\"--awb-bg-size:cover;--awb-width-large:66.666666666667%;--awb-margin-top-large:0px;--awb-spacing-right-large:2.88%;--awb-margin-bottom-large:20px;--awb-spacing-left-large:2.88%;--awb-width-medium:100%;--awb-order-medium:0;--awb-spacing-right-medium:1.92%;--awb-spacing-left-medium:1.92%;--awb-width-small:100%;--awb-order-small:0;--awb-spacing-right-small:1.92%;--awb-spacing-left-small:1.92%;\"><div class=\"fusion-column-wrapper fusion-column-has-shadow fusion-flex-justify-content-flex-start fusion-content-layout-column\"><div class=\"fusion-text fusion-text-1\" style=\"--awb-content-alignment:justify;--awb-font-size:20px;\"><p><strong>Imaging mass cytometry (IMC)<\/strong> enables deep, single-cell interrogation of cell phenotypes, cell-cell interactions and spatial proximity within normal and diseased tissues.<\/p>\n<p>Hyperion can image tissue sections stained with up to 40 metal-containing reagents at 1 micron resolution, comparable to light microscopy, but with much higher content. Detecting markers with metal tagged Abs provides uniform staining with minimal background and no autofluorescence.<\/p>\n<p>See examples of our IMC data for normal mouse tissues (<a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/06\/Spleen.png\" target=\"_blank\" rel=\"noopener\">spleen<\/a>, <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-Thymus.png\" target=\"_blank\" rel=\"noopener\">thymus<\/a> and <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-Mouse-Small-Intestine.png\" target=\"_blank\" rel=\"noopener\">small intestine<\/a>), tumor immune profiling (<a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-Mammory.png\" target=\"_blank\" rel=\"noopener\">mouse mammary gland<\/a> and <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/06\/Brain.png\" target=\"_blank\" rel=\"noopener\">brain<\/a>) and <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-Tonsil.png\" target=\"_blank\" rel=\"noopener\">human tonsil<\/a>.<\/p>\n<p><strong>We can perform small-scale IMC pilots<\/strong> on your sections cut from freshly frozen or formaldeyde-fixed, paraffin-embedded (FFPE) tissues. We will stain them with our validated metal-tagged IMC Ab panels for <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/CASCA-Mouse-Fresh-Frozen-IMC-Panel_20230501.pdf\" target=\"_blank\" rel=\"noopener\">mouse frozen<\/a>, <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/CASCA-Mouse-FFPE-IMC-Panel_20230501.pdf\" target=\"_blank\" rel=\"noopener\">mouse FFPE<\/a>\u00a0 or <a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2022\/09\/New-Hyperion-Panel-Human-FFPE-20220613.pdf\" target=\"_blank\" rel=\"noopener\">human FFPE<\/a>.<\/p>\n<p><strong>Contact <a href=\"mailto:Tina.Chen@sickkids.ca\" target=\"_blank\" rel=\"noopener noreferrer\">Tina Chen<\/a><\/strong> with any questions, for a cost estimate and\/or to schedule your pilot study.<\/p>\n<\/div><\/div><\/div><div class=\"fusion-layout-column fusion_builder_column fusion-builder-column-1 fusion_builder_column_1_3 1_3 fusion-flex-column\" style=\"--awb-bg-blend:overlay;--awb-bg-size:cover;--awb-width-large:33.333333333333%;--awb-margin-top-large:0px;--awb-spacing-right-large:5.76%;--awb-margin-bottom-large:0px;--awb-spacing-left-large:5.76%;--awb-width-medium:100%;--awb-spacing-right-medium:1.92%;--awb-spacing-left-medium:1.92%;--awb-width-small:100%;--awb-spacing-right-small:1.92%;--awb-spacing-left-small:1.92%;\"><div class=\"fusion-column-wrapper fusion-flex-justify-content-flex-start fusion-content-layout-column\"><div class=\"fusion-text fusion-text-2\" style=\"--awb-text-color:#0000ff;--awb-margin-top:-30px;\"><h2><strong>IMC Services<\/strong><\/h2>\n<\/div><div class=\"fusion-image-element \" style=\"--awb-caption-title-font-family:var(--h2_typography-font-family);--awb-caption-title-font-weight:var(--h2_typography-font-weight);--awb-caption-title-font-style:var(--h2_typography-font-style);--awb-caption-title-size:var(--h2_typography-font-size);--awb-caption-title-transform:var(--h2_typography-text-transform);--awb-caption-title-line-height:var(--h2_typography-line-height);--awb-caption-title-letter-spacing:var(--h2_typography-letter-spacing);\"><span class=\" fusion-imageframe imageframe-none imageframe-1 hover-type-none\"><a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow.png\" class=\"fusion-lightbox\" data-rel=\"iLightbox[11fdff78389f413fb5a]\"><img decoding=\"async\" width=\"1812\" height=\"798\" src=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow.png\" alt class=\"img-responsive wp-image-1257\" srcset=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow-200x88.png 200w, https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow-400x176.png 400w, https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow-600x264.png 600w, https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow-800x352.png 800w, https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow-1200x528.png 1200w, https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2023\/05\/IMC-WorkFlow.png 1812w\" sizes=\"(max-width: 1024px) 100vw, (max-width: 640px) 100vw, 400px\" \/><\/a><\/span><\/div><div class=\"accordian fusion-accordian\" style=\"--awb-border-size:1px;--awb-icon-size:13px;--awb-content-font-size:15.5px;--awb-icon-alignment:left;--awb-hover-color:#f9f9f9;--awb-border-color:rgba(100,160,200,0.24);--awb-background-color:#ffffff;--awb-divider-color:#e0dede;--awb-divider-hover-color:#e0dede;--awb-icon-color:#ffffff;--awb-title-color:#00afd8;--awb-content-color:#757575;--awb-icon-box-color:#333333;--awb-toggle-hover-accent-color:#64a0c8;--awb-title-font-family:Arial, Helvetica, sans-serif;--awb-title-font-weight:400;--awb-title-font-style:normal;--awb-title-font-size:22px;--awb-title-line-height:2.0;--awb-content-font-family:Arial, Helvetica, sans-serif;--awb-content-font-style:normal;--awb-content-font-weight:400;\"><div class=\"panel-group fusion-toggle-icon-boxed\" id=\"accordion-602-1\"><div class=\"fusion-panel panel-default panel-4935d3b16920aa1b2 fusion-toggle-has-divider\" style=\"--awb-title-color:#00afd8;--awb-content-color:#757575;\"><div class=\"panel-heading\"><h4 class=\"panel-title toggle\" id=\"toggle_4935d3b16920aa1b2\"><a aria-expanded=\"false\" aria-controls=\"4935d3b16920aa1b2\" role=\"button\" data-toggle=\"collapse\" data-parent=\"#accordion-602-1\" data-target=\"#4935d3b16920aa1b2\" href=\"#4935d3b16920aa1b2\"><span class=\"fusion-toggle-icon-wrapper\" aria-hidden=\"true\"><i class=\"fa-fusion-box active-icon awb-icon-minus\" aria-hidden=\"true\"><\/i><i class=\"fa-fusion-box inactive-icon awb-icon-plus\" aria-hidden=\"true\"><\/i><\/span><span class=\"fusion-toggle-heading\">Assisted Hyperion Acquisition<\/span><\/a><\/h4><\/div><div id=\"4935d3b16920aa1b2\" class=\"panel-collapse collapse \" aria-labelledby=\"toggle_4935d3b16920aa1b2\"><div class=\"panel-body toggle-content fusion-clearfix\">\n<p>This DIY option is for labs who have invested in their own reagents and have the trained staff to perform upstream sample preparation and labelling for IMC. We will scan one or more regions of interest (750-1500 uM<sup>2<\/sup>) on your stained slides, academic pricing below\u00a0<a href=\"https:\/\/ca.ilab.agilent.com\/account\/302\/signup?sc_id=4205\" target=\"_blank\" rel=\"noopener\">(booked through iLab)<\/a>.<\/p>\n<ul>\n<li><strong>Acquisition set-up fee is $75 per slide for SickKids academic labs ($90 external academic). <\/strong>\n<ul>\n<li>Price includes ROI selection and acquisition software set-up.<\/li>\n<\/ul>\n<\/li>\n<li><strong>Acquisition fee is $95\/hr for SickKids academic labs ($115\/hr external academic) charged by the total ablation time<\/strong>\n<ul>\n<li>Approx\u00a0Hyperion run times by ROI size (in um^2)\n<ul>\n<li>750: 1h<\/li>\n<li>1000: 2h<\/li>\n<li>1250: 3h<\/li>\n<li>1500: 4h<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>Download templates required for booking acquisition time:<\/p>\n<p><a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2024\/07\/CASCA_slide_tissue_mounting_-guide.pdf\" target=\"_blank\" rel=\"noopener\">CASCA_slide_tissue_mounting_ guide\/howto<\/a><\/p>\n<p><a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2024\/07\/IMC-Submitted-slide-annotation_Blank.pptx\" target=\"_blank\" rel=\"noopener\">IMC Submitted slide annotation_Blank<\/a><\/p>\n<p><a href=\"https:\/\/lab.research.sickkids.ca\/casca\/wp-content\/uploads\/sites\/84\/2024\/07\/IMC_Acq_Panel_blank.xlsx\" target=\"_blank\" rel=\"noopener\">IMC_Acq_Panel_blank<\/a><\/p>\n<\/div><\/div><\/div><div class=\"fusion-panel panel-default panel-d073b93a144bbc99e fusion-toggle-has-divider\" style=\"--awb-title-color:#00afd8;--awb-content-color:#757575;\"><div class=\"panel-heading\"><h4 class=\"panel-title toggle\" id=\"toggle_d073b93a144bbc99e\"><a aria-expanded=\"false\" aria-controls=\"d073b93a144bbc99e\" role=\"button\" data-toggle=\"collapse\" data-parent=\"#accordion-602-1\" data-target=\"#d073b93a144bbc99e\" href=\"#d073b93a144bbc99e\"><span class=\"fusion-toggle-icon-wrapper\" aria-hidden=\"true\"><i class=\"fa-fusion-box active-icon awb-icon-minus\" aria-hidden=\"true\"><\/i><i class=\"fa-fusion-box inactive-icon awb-icon-plus\" aria-hidden=\"true\"><\/i><\/span><span class=\"fusion-toggle-heading\">Data Analysis<\/span><\/a><\/h4><\/div><div id=\"d073b93a144bbc99e\" class=\"panel-collapse collapse \" aria-labelledby=\"toggle_d073b93a144bbc99e\"><div class=\"panel-body toggle-content fusion-clearfix\">\n<p style=\"font-weight: 400\">Clients will receive the original .mcd file generated by the acquisition software. MCD viewer software is available free of charge from SBI for a simple and quick visualization of the acquired data. In addition, clients can request for data pre-processing service where we export single channel 32-bit .tiff files from the raw .mcd data file and apply CASCA pre-processing script to remove noise and outliers.\u00a0 Pre-processed files are suitable for cell segmentation or other downstream algorithmic workflows.<\/p>\n<p>Contact <a href=\"mailto:Tina.Chen@sickkids.ca\" target=\"_blank\" rel=\"noopener noreferrer\">Tina Chen<\/a> for a consultation.<\/p>\n<\/div><\/div><\/div><\/div><\/div><\/div><\/div><\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":141,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-602","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v27.0 (Yoast SEO v27.0) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>Hyperion Imaging 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